DynDom - Protein Domain Motions

Polypeptide N-Acetylgalactosaminyltransferase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Polypeptide N-Acetylgalactosaminyltransferase 2
Conformer 1 (PDB)	2ffu (A)
Conformer 2 (PDB)	2ffv (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	358	3.21	77 - 442
2	121	1.68	443 - 565

Sequence

`________________________________________________________________________________________________________________________` `2ffu(A) : *KVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE` `:` `2ffv(A) : DALKVRWPDFNQEAYVGG--------pYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2ffu(A) : KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLF` `:` `2ffv(A) : KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLF` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2ffu(A) : VMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLE` `:` `2ffv(A) : VMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLE` `________________________________________________________________________________________________________________________` `________442_____________________________________________________________________________________________________________` `2ffu(A) : NVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLS` `:` `2ffv(A) : NVYPELRVPDHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHN--gNQEWALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAKSGGLS` `________442_____________________________________________________________________________________________________________` `___________________` `2ffu(A) : VEVCGPALSQQWKFTLN` `:` `2ffv(A) : VEVCGPALSQQWKFTLNLQ` `___________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	62.5
Translation (A)	-10.3
Closure (%)	70.1
Bending Residues ( green )	442 - 449
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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