Precursor Of Periplasmic Sugar Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Precursor Of Periplasmic Sugar Receptor
  Conformer 1
(PDB)
1rpj (A)
  Conformer 2
(PDB)
1gud (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 147 0.92   3 - 112   246 - 282
2 137 0.49   113 - 245   283 - 286

Sequence


           _____________________________________________________________________________________________________________112________ 
 1rpj(A) : AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAK 
         :                                                                                                                          
 1gud(A) : AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAK 
           _____________________________________________________________________________________________________________112________ 

           ________________________________________________________________________________________________________________________ 
 1rpj(A) : GASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ 
         :                                                                                                                          
 1gud(A) : GASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQ 
           ________________________________________________________________________________________________________________________ 

           __245_________________________________281_______                                                                         
 1rpj(A) : MTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ                                                                         
         :                                                                                                                          
 1gud(A) : MTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ                                                                         
           __245_________________________________281_______                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
41.8
Translation
(A)
0.4
Closure
(%)
76.4
Bending Residues
( green )
  112 - 114
  245 - 246
  281 - 286
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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