Prephenate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Prephenate Dehydrogenase
  Conformer 1
(PDB)
2g5c (D)
  Conformer 2
(PDB)
2g5c (B)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 166 0.52   37 - 205
2 60 0.29   206 - 224   257 - 299

Sequence


           ________________________________________________________________________________________________________________________ 
 2g5c(D) : QNVLIVGVGFgGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVlSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGT 
         :                                                                                                                          
 2g5c(B) : QNVLIVGVGFgGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVlSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________199_________________________________________________________________________ 
 2g5c(D) : EKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYsPELHDYVFGVVSHLPHAVAFALVDTLIHsTPEVDLFKYPGGGFKDFTRIAKSDPIwRDIFLENKENVkAIEG 
         :                                                                                                                          
 2g5c(B) : EKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYsPELHDYVFGVVSHLPHAVAFALVDTLIHsTPEVDLFKYPGGGFKDFTRIAKSDPIwRDIFLENKENVkAIEG 
           ____________________________________________199_________________________________________________________________________ 

           _________________________________                                                                                        
 2g5c(D) : FEKSLNHLKELIVREAEEELVEYLKEVKIKR**                                                                                        
         :                                                                                                                          
 2g5c(B) : FEKSLNHLKELIVREAEEELVEYLKEVKIKReI                                                                                        
           _________________________________                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.6
Closure
(%)
95.2
Bending Residues
( green )
  199 - 206
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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