Probable Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Transcriptional Regulator
  Conformer 1
(PDB) 		2oer (B)
  Conformer 2
(PDB) 		2oer (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 91 0.77   23 - 86   112 - 148
2 83 0.49   87 - 111   149 - 207

Sequence


           _______________________________________________________________86______________________111______________________________ 
 2oer(B) : SSELVASILEAAVQVLAgAQRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLERLRRLVLAFVRSECEEAAIRVALSDAAPLYRDADEAREVKAEG 
         :                                                                                                                          
 2oer(A) : *SELVASILEAAVQV----qRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTTRLLGEILEDTTRPPLERLRRLVLAFVRSECEEAAIRVALSDAAPLY----eAREVKAEG 
           _______________________________________________________________86______________________111______________________________ 

           ____148_____________________________________________________________                                                     
 2oer(B) : ARVFQAFLREALPEVAEAERSLAGDLLTTTLGAVGKQFSEQPRSEAEIERYAEALADlCAYLAALGER                                                     
         :                                                                                                                          
 2oer(A) : ARVFQAFLREALPEVAEAERSLAGDLLTTTLGAVGKQFSEQPRSEAEIERYAEALADlCAYLAALGE*                                                     
           ____148_____________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.5
Translation
(A) 		0.4
Closure
(%) 		21.2
Bending Residues
( green ) 		  86 - 87
  111 - 112
  148 - 150
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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