Programmed Cell Death 6-Interacting Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Programmed Cell Death 6-Interacting Protein
  Conformer 1
(PDB) 		2ojq (A)
  Conformer 2
(PDB) 		2oex (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 288 1.68   379 - 577   608 - 699
2 44 1.93   364 - 378   578 - 607

Sequence


           ________________378_____________________________________________________________________________________________________ 
 2ojq(A) : PVSVQQSLAAYNQRKADLVNRSIAQrEATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP 
         :                                                                                                                          
 2oex(B) : **SVQQSLAAYNQRKADLVNRSIAQrEATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP 
           ________________378_____________________________________________________________________________________________________ 

           _____________________________________________________________________________________________577________________________ 
 2ojq(A) : SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTqGSEVVSVLKSLLSNLDEVKKEREGLENDLKSVNFDtSKFLTALAQDGVINEEALSVT 
         :                                                                                                                          
 2oex(B) : SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTqGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDtSKFLTALAQDGVINEEALSVT 
           _____________________________________________________________________________________________577________________________ 

           __607______________________________________________________________________________________________                      
 2ojq(A) : ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKkQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER                      
         :                                                                                                                          
 2oex(B) : ELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKkQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARKTER                      
           __607______________________________________________________________________________________________                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.5
Translation
(A) 		0.1
Closure
(%) 		18.1
Bending Residues
( green ) 		  378 - 379
  577 - 578
  607 - 608
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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