Protein Kinase Ypka

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Kinase Ypka
  Conformer 1
(PDB) 		2h7v (C)
  Conformer 2
(PDB) 		2h7v (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 1.14   443 - 610
2 109 0.7   611 - 730

Sequence


           ________________________________________________________________________________________________________________________ 
 2h7v(C) : RITPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSLILKTYRVIEDYVKGsNFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEV 
         :                                                                                                                          
 2h7v(D) : **TPKKLRELSDLLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAERE--vDKDQLKSFNSLILKTYRVIEDYV---nFMLSIVEPSLQRIQKHLDQTHSFSDIGSLVRAHKHLETLLEV 
           ________________________________________________________________________________________________________________________ 

           ________________________________610_____________________________________________________________________________________ 
 2h7v(C) : LVTLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPyTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSLM 
         :                                                                                                                          
 2h7v(D) : LVTLSQQGQPVSSETYGFLNRLAEAKITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTR--tAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRSSL- 
           ________________________________610_____________________________________________________________________________________ 

           _____________________________                                                                                            
 2h7v(C) : DEHLVEQREKLRELTTIAERLNRLEREWM                                                                                            
         :                                                                                                                          
 2h7v(D) : dEHLVEQREKLRELTTIAERLNRLEREWM                                                                                            
           _____________________________                                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.0
Translation
(A) 		-0.2
Closure
(%) 		80.9
Bending Residues
( green ) 		  610 - 611
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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