Protein Disulfide-Isomerase A3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein Disulfide-Isomerase A3
  Conformer 1
(PDB) 		2h8l (C)
  Conformer 2
(PDB) 		2h8l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 129 0.33   208 - 217   241 - 363
2 94 0.39   136 - 207   218 - 240

Sequence


           _______________________________________________________________________207_______217__________________239_______________ 
 2h8l(C) : PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKtSGKIKKFIQENIFGICPHtEDNKDLI 
         :                                                                                                                          
 2h8l(A) : PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKtSGKIKKFIQENIFGICPHtEDNKDLI 
           _______________________________________________________________________207_______217__________________239_______________ 

           ___________________________________________________________________________________________________________              
 2h8l(C) : QGKDLLIAYYDVDYEKNAKGSNYWRNRVvAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVqEEFSRDGKALERFLQDYFDGNLKRYL              
         :                                                                                                                          
 2h8l(A) : QGKDLLIAYYDVDYEKNAKGSNYWRNRVvAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVqEEFSRDGKALERFLQDYFDGNLKRYL              
           ___________________________________________________________________________________________________________              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.5
Translation
(A) 		0.3
Closure
(%) 		17.5
Bending Residues
( green ) 		  207 - 208
  217 - 218
  239 - 241
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download