Pyridoxine 5'-Phosphate Oxidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pyridoxine 5'-Phosphate Oxidase
  Conformer 1
(PDB)
2aq6 (A)
  Conformer 2
(PDB)
2aq6 (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 46 0.49   14 - 47   85 - 86   131 - 140
2 44 0.25   87 - 130

Sequence


           _______________________________________________________________________________85_______________________________________ 
 2aq6(A) : VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM 
         :                                                                                                                          
 2aq6(B) : VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAM 
           _______________________________________________________________________________85_______________________________________ 

           __129__________________                                                                                                  
 2aq6(A) : VTDRRVLLTLPISHVYGLPPGMR                                                                                                  
         :                                                                                                                          
 2aq6(B) : VTDRRVLLTLPISHVYGLPPGMR                                                                                                  
           __129__________________                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.6
Translation
(A)
0.5
Closure
(%)
93.6
Bending Residues
( green )
  85 - 90
  129 - 133
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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