Restriction Endonuclease EcorII

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Restriction Endonuclease EcorII
  Conformer 1
(PDB)
1na6 (B)
  Conformer 2
(PDB)
1na6 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 331 1.86   6 - 171   177 - 235   257 - 396
2 23 1.07   172 - 173   236 - 256

Sequence


           ________________________________________________________________________________________________________________________ 
 1na6(B) : SVFHNWLLEIACENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFK 
         :                                                                                                                          
 1na6(A) : SVFHNWLLEIACENYFVYIKRLSANDTGAT---qVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________166__________________________________________________________________235________ 
 1na6(B) : LDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAP----yILPEDWHLRFPSGSEIIQYAASHYVKNSLDPDEQLLDRRRVEYDIFLLVEELHVLDIIRK 
         :                                                                                                                          
 1na6(A) : LDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHY-----dPDEQLLDRRRVEYDIFLLVEELHVLDIIRK 
           ________________________________________166__________________________________________________________________235________ 

           __________256___________________________________________________________________________________________________________ 
 1na6(B) : GFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAITEGNKKPDFLFPSAGAYHDTEFPVENLRMLAVKTTCKDRWRQILNEADKIHQVHLFTLQEGVSLAQYREMRE 
         :                                                                                                                          
 1na6(A) : GFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQA-------pDFLFPSAGAYH----p---lRMLAVKTTCKDRWRQILN--------hLFTLQEGVSLAQYREMRE 
           __________256___________________________________________________________________________________________________________ 

           _______________________________________                                                                                  
 1na6(B) : SGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTGLYAD                                                                                  
         :                                                                                                                          
 1na6(A) : SGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTG****                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.1
Translation
(A)
0.0
Closure
(%)
92.2
Bending Residues
( green )
  166 - 177
  235 - 236
  256 - 257
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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