R.mvai

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name R.mvai
  Conformer 1
(PDB) 		2oaa (B)
  Conformer 2
(PDB) 		2oaa (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.25   45 - 164   169 - 173   187 - 239
2 55 0.41   7 - 44   165 - 168   174 - 186

Sequence


           ____________________________________________44__________________________________________________________________________ 
 2oaa(B) : KSMSEYLNLLKEAIQNVVDGGWHETKRKGNTGIGKTFEDLLEKEEDNLDAPDFHDIEIKTHETAAKSLLTLFTKSPTNPRGANTMLRNRYGKKDEYGNNILHQTVSGNRKTNSNSYNYDF 
         :                                                                                                                          
 2oaa(A) : *SMSEYLNLLKEAIQNVVDGGWHETKRKGNTGIGKTFEDLLEKEEDNLDAPDFHDIEIKTHETAAKSLLTLFTKSPTNPRGANTMLRNRYGKKDEYGNNILHQTVSGNRKTNSNSYNYDF 
           ____________________________________________44__________________________________________________________________________ 

           __________________________________________163__168_______________186____________________________________________________ 
 2oaa(B) : KIDIDWESQVVRLEVFDKQDIMIDNSVYWSFDSLQNQLDKKLKYIAVISAESKIENEKKYYKYNSANLFTDLTVQSLCRGIENGDIKVDIRIGAYHSGKKKGKTHDHGTAFRINMEKLLE 
         :                                                                                                                          
 2oaa(A) : KIDIDWESQVVRLEVFDKQDIMIDNSVYWSFDSLQNQLDKKLKYIAVISAESKIENEKKYYKYNSANLFTDLTVQSLCRGIENGDIKVDIRIGAYHSGKKKGKTHDHGTAFRINMEKLLE 
           __________________________________________163__168_______________186____________________________________________________ 

           ________                                                                                                                 
 2oaa(B) : YGEVKVIV                                                                                                                 
         :                                                                                                                          
 2oaa(A) : YGEVKVIV                                                                                                                 
           ________                                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.4
Translation
(A) 		0.1
Closure
(%) 		11.6
Bending Residues
( green ) 		  44 - 46
  163 - 165
  168 - 174
  186 - 187
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download