DynDom - Protein Domain Motions

RNA Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	RNA Helicase
Conformer 1 (PDB)	8ohm
Conformer 2 (PDB)	1cu1 (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	290	0.68	192 - 327 434 - 448 484 - 622
2	141	1.23	328 - 433 449 - 483

Sequence

`________________________________________________________________________________________________________________________` `8ohm : **********************************************************************************************************************` `:` `1cu1(B) : GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `8ohm : *******************************************************************************PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL` `:` `1cu1(B) : VTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________________________324______________________` `8ohm : VLNPSVAATLGFGVYMSKAHGIDPNIRTGVRAITTGGPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTSILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGE` `:` `1cu1(B) : VLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGE` `______________________________________________________________________________________________1324______________________` `____________________________________________________________________________________433___________447___________________` `8ohm : IPFYGKAIPIEVIRGGRHLIFCHSKKKCDELAAKLSALGLNAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIDTTTVPQDAVSRSQRRGRTG` `:` `1cu1(B) : IPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTG` `___________________________________________________________________________________1433__________1447___________________` `_____________482________________________________________________________________________________________________________` `8ohm : RGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKSLT` `:` `1cu1(B) : RGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLI` `____________1482________________________________________________________________________________________________________` `_____________________________________________` `8ohm : RLKPTLHGPTPLLYRLGALQNEVTLTHPVTKFIMACMS*****` `:` `1cu1(B) : RLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT` `_____________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	35.3
Translation (A)	0.2
Closure (%)	97.1
Bending Residues ( green )	324 - 330 433 - 434 447 - 449 482 - 484
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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