RNA Polymerase II Mediator Complex Subunit 20

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name RNA Polymerase II Mediator Complex Subunit 20
  Conformer 1
(PDB) 		2hzm (A)
  Conformer 2
(PDB) 		2hzs (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 112 0.86   5 - 10   37 - 125   155 - 159   185 - 205
2 83 0.65   4 - 4   11 - 36   126 - 154   160 - 184   206 - 207

Sequence


           __4____10________________________36_____________________________________________________________________________________ 
 2hzm(A) : GKSAVIFVERATPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKNL----sKLMYSITFHHHGRQTVLIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQL 
         :                                                                                                                          
 2hzs(E) : GKSAVIFVERATPATLTELKDALSNSILSVRDPWSIDFRTYRCSIKNLPADVSKLMYSITFHHHGRQTVLIKDNSAMVTTAAAADIPPALVFNGSSTGVPESIDTILSSKLSNIWMQRQL 
           __4____10________________________36_____________________________________________________________________________________ 

           _125__________________________154__159______________________184__________________205_____                                
 2hzm(A) : IKGDAGETLILDGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYKTSSDSLGPDTSNEICDLAYQYVRALEL                                
         :                                                                                                                          
 2hzs(E) : IKGDAGETLILDGLTVRLVNLFSSTGFKGLLIELQADEAGEFETKIAGIEGHLAEIRAKEYKTSSDSL-----nEICDLAYQYVRALE*                                
           _125__________________________154__159______________________184__________________205_____                                

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.2
Translation
(A) 		-0.2
Closure
(%) 		98.4
Bending Residues
( green ) 		  4 - 5
  10 - 11
  36 - 37
  125 - 126
  154 - 155
  159 - 161
  184 - 185
  205 - 206
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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