Serine/threonine-Protein Kinase Plk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Serine/threonine-Protein Kinase Plk
  Conformer 1
(PDB) 		1q4o (B)
  Conformer 2
(PDB) 		1q4k (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 106 0.55   375 - 375   378 - 405   415 - 420   422 - 422   514 - 523   531 - 590
2 98 0.68   373 - 374   376 - 377   406 - 414   421 - 421   423 - 513   524 - 530

Sequence


           _374________________________401__________414___420______________________________________________________________________ 
 1q4o(B) : DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHL 
         :                                                                                                                          
 1q4k(B) : DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHL 
           _374________________________401__________414___420______________________________________________________________________ 

           ____________________513_______523____530________________________________________________________________                 
 1q4o(B) : LKA--------------lPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLS**                 
         :                                                                                                                          
 1q4k(B) : LKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSSR                 
           ____________________513_______523____530________________________________________________________________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.6
Translation
(A) 		0.1
Closure
(%) 		70.2
Bending Residues
( green ) 		  374 - 378
  401 - 406
  414 - 415
  420 - 423
  513 - 514
  523 - 524
  530 - 531
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download