Sialidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sialidase
  Conformer 1
(PDB)
1kit  
  Conformer 2
(PDB)
1w0p (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 528 0.72   220 - 241   244 - 260   263 - 273   277 - 696   700 - 744   749 - 749   753 - 763   768 - 768
2 216 0.8   30 - 219   242 - 243   261 - 262   274 - 276   697 - 699   745 - 748   750 - 752   764 - 767   769 - 773

Sequence


           ________________________________________________________________________________________________________________________ 
 1kit    : ALFDYNATGDTEFDSPAKQGWMQDNTNNGSGVLTNADGMPAWLVQGIGGRAQWTYSLSTNQHAQASSFGWRMTTEMKVLSGGMITNYYANGTQRVLPIISLDSSGNLVVEFEGQTGRTVL 
         :                                                                                                                          
 1w0p(A) : ALFDYNATGDTEFDSPAKQGWMQDNTNNGSGVLTNADGMPAWLVQGIGGRAQWTYSLSTNQHAQASSFGWRMTTEMKVLSGGMITNYYANGTQRVLPIISLDSSGNLVVEFEGQTGRTVL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________219___________________241________________260____ 
 1kit    : ATGTAATEYHKFELVFLPGSNPSASFYFDGKLIRDNIQPTASKQNMIVWGNGSSNTDGVAAYRDIKFEIQGDVIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRT 
         :                                                                                                                          
 1w0p(A) : ATGTAATEYHKFELVFLPGSNPSASFYFDGKLIRDNIQPTASKQNMIVWGNGSSNTDGVAAYRDIKFEIQGDVIFRGPDRIPSIVASSVTPGVVTAFAEKRVGGGDPGALSNTNDIITRT 
           ________________________________________________________________________219___________________241________________260____ 

           ______273_______________________________________________________________________________________________________________ 
 1kit    : SRDGGITWDTELNLTEQINVSDEFDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIDVTDQVKERSFQIAGWGGSELYRRNTSLNSQQDWQSNA 
         :                                                                                                                          
 1w0p(A) : SRDGGITWDTELNLTEQINVSDEFDFSDPRPIYDPSSNTVLVSYARWPTDAAQNGDRIKPWMPNGIFYSVYDVASGNWQAPIDVTDQVKERSFQIAGWGGSELYRRNTSLNSQQDWQSNA 
           ______273_______________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kit    : KIRIVDGAANQIQVADGSRKYVVTLSIDESGGLVANLNGVSAPIILQSEHAKVHSFHDYELQYSALNHTTTLFVDGQQITTWAGEVSQENNIQFGNADAQIDGRLHVQKIVLTQQGHNLV 
         :                                                                                                                          
 1w0p(A) : KIRIVDGAANQIQVADGSRKYVVTLSIDESGGLVANLNGVSAPIILQSEHAKVHSFHDYELQYSALNHTTTLFVDGQQITTWAGEVSQENNIQFGNADAQIDGRLHVQKIVLTQQGHNLV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1kit    : EFDAFYLAQQTPEVEKDLEKLGWTKIKTGNTMSLYGNASVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVE 
         :                                                                                                                          
 1w0p(A) : EFDAFYLAQQTPEVEKDLEKLGWTKIKTGNTMSLYGNASVNPGPGHGITLTRQQNISGSQNGRLIYPAIVLDRFFLNVMSIYSDDGGSNWQTGSTLPIPFRWKSSSILETLEPSEADMVE 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________696_____________________________________________744 
 1kit    : LQNGDLLLTARLDFNQIVNGVNYSPRQQFLSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQLVNGASAYSDIY 
         :                                                                                                                          
 1w0p(A) : LQNGDLLLTARLDFNQIVNGVNYSPRQQFLSKDGGITWSLLEANNANVFSNISTGTVDASITRFEQSDGSHFLLFTNPQGNPAGTNGRQNLGLWFSFDEGVTWKGPIQLVNGASAYSDIY 
           _____________________________________________________________________696_____________________________________________744 

           _748_752________763_767______________                                                                                    
 1kit    : QLDSENAIVIVETDNSNMRILRMPITLLKQKLTLSQN                                                                                    
         :                                                                                                                          
 1w0p(A) : QLDSENAIVIVETDNSNMRILRMPITLLKQKLT****                                                                                    
           _748_752________763_767______________                                                                                    

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.1
Translation
(A)
0.3
Closure
(%)
42.0
Bending Residues
( green )
  219 - 220
  241 - 244
  260 - 263
  273 - 274
  276 - 277
  696 - 697
  699 - 700
  744 - 745
  748 - 750
  752 - 753
  763 - 764
  767 - 769
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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