Sugar Phosphatase Suph

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Phosphatase Suph
  Conformer 1
(PDB)
2hf2 (B)
  Conformer 2
(PDB)
1rlo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 0.78   82 - 93   108 - 111   114 - 118   133 - 143   148 - 188
2 152 0.72   5 - 81   189 - 268
3 33 1.03   94 - 107   112 - 113   119 - 132   144 - 147

Sequence


           _______________________________________________________________________74_________________93___________107_111____118___ 
 2hf2(B) : LSVKVIVTDdGTFLNDAKTYNQPRF-aQYQELKKRGIKFVVASNNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEA 
         :                                                                                                                          
 1rlo(D) : **VKVIVTmDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEA 
           _______________________________________________________________________74_________________93___________107_111____118___ 

           ________132_______142__147______________________________________188_____________________________________________________ 
 2hf2(B) : FVAL-aKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGI-kPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAE-lK-aRYSFA-gNAAENIKQ 
         :                                                                                                                          
 1rlo(D) : FVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQ 
           ________132_______142__147______________________________________188_____________________________________________________ 

           _____________________________                                                                                            
 2hf2(B) : IARYATDDNNHEGALNVIQAVLDNTSPFN                                                                                            
         :                                                                                                                          
 1rlo(D) : IARYATDDNNHEGALNVIQAVLDNTYPFN                                                                                            
           _____________________________                                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.0
Translation
(A)
-1.4
Closure
(%)
97.3
Bending Residues
( green )
  74 - 83
  188 - 190
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
9.6
Translation
(A)
0.0
Closure
(%)
60.0
Bending Residues
( green )
  93 - 94
  107 - 108
  111 - 114
  118 - 119
  132 - 133
  142 - 145
  147 - 148
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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