DynDom - Protein Domain Motions

Sulfate Adenylyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Sulfate Adenylyltransferase
Conformer 1 (PDB)	1g8g (A)
Conformer 2 (PDB)	1r6x (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	286	0.63	4 - 176 191 - 200 217 - 243 254 - 325 377 - 380
2	20	0.42	177 - 190 248 - 253
3	45	1.09	201 - 216 326 - 330 354 - 373 381 - 384

Sequence

`________________________________________________________________________________________________________________________` `1g8g(A) : PAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVY` `:` `1r6x(A) : PAPHGGILQDLIARDALKKNELLSEAQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQIKPDTRIALFQDDEIPIAILTVQDVY` `________________________________________________________________________________________________________________________` `____________________________________________________176___________190_______200_____________216_____________232_________` `1g8g(A) : KPNKTIEAERVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHTRVRV` `:` `1r6x(A) : KPNKTIEAEKVFRGDPEHPAISYLFNVAGDYYVGGSLEAIQLPQHYDYPGLRKTPAQLRLEFQSRQWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLTKPGDIDHHTRVRV` `____________________________________________________176___________190_______200_____________216_____________232_________` `________________________________________________________________308_____________________________________________________` `1g8g(A) : YQEIIKRYPNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTEL` `:` `1r6x(A) : YQEIIKRYPNGIAFLSLLPLAMRMSGDREAVWHAIIRKNYGASHFIVGRDHAGPGKNSKGVDFYGPYDAQELVESYKHELDIEVVPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTEL` `________________________________________________________________308_____________________________________________________` `_________373____________________________________________________________________________________________________________` `1g8g(A) : RRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTELLSLIQDFIGSGSGLIIPDQWEDDKDSVVGKQNVYLLDTSSSA` `:` `1r6x(A) : RRRLRVGGEIPEWFSYPEVVKILRES********************************************************************************************` `_________373____________________________________________________________________________________________________________` `______________________________` `1g8g(A) : DIQLESADEPISHIVQKVVLFLEDNGFFVF` `:` `1r6x(A) : ****************************` `______________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	7.9
Translation (A)	0.2
Closure (%)	80.1
Bending Residues ( green )	176 - 177 190 - 193 232 - 254
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	10.8
Translation (A)	0.0
Closure (%)	96.9
Bending Residues ( green )	200 - 201 216 - 217 308 - 330 373 - 381
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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