Surface Layer Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Surface Layer Protein
  Conformer 1
(PDB)
1l0q (C)
  Conformer 2
(PDB)
1l0q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 294 0.4   3 - 301   373 - 373
2 87 0.28   302 - 372   374 - 389

Sequence


           ________________________________________________________________________________________________________________________ 
 1l0q(C) : STFAYIANSESDNISVIDVTSNKVTATIPVGSNPgAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNaSSTLSVIDTTSNTVAGTVKTGKSPLGLA 
         :                                                                                                                          
 1l0q(A) : STFAYIANSESDNISVIDVTSNKVTATIPVGSNPgAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNaSSTLSVIDTTSNTVAGTVKTGKSPLGLA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1l0q(C) : LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSsISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSiDTGTNKITARIPVGP 
         :                                                                                                                          
 1l0q(A) : LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSsISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSiDTGTNKITARIPVGP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________297_____________________________________________________________________ 
 1l0q(C) : DPAGIAVTPDGKKVYVALSFnTVSVIDTATNTITATaVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTVRLT 
         :                                                                                                                          
 1l0q(A) : DPAGIAVTPDGKKVYVALSFnTVSVIDTATNTITATaVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSKKQNPTHTYSETGIYTVRLT 
           ________________________________________________297_____________________________________________________________________ 

           ___372___________________                                                                                                
 1l0q(C) : VSNSNGTDSQISTVNVVLKGSPTPS                                                                                                
         :                                                                                                                          
 1l0q(A) : VSNSNGTDSQISTVNVVLKGSPTPS                                                                                                
           ___372___________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.9
Translation
(A)
-0.2
Closure
(%)
87.9
Bending Residues
( green )
  297 - 302
  372 - 374
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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