DynDom - Protein Domain Motions

Tarm

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Tarm
Conformer 1 (PDB)	4x7r (A)
Conformer 2 (PDB)	4x7p (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	163	0.61	3 - 72 209 - 250 265 - 305 406 - 413 486 - 487
2	66	0.36	79 - 98 132 - 175 181 - 182
3	23	0.34	176 - 179 190 - 208
4	186	0.51	251 - 264 306 - 405 414 - 485
5	23	0.58	99 - 121

Sequence

`______________________________________________________________________72_______________________97_____________________12` `4x7r(A) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTRTYI` `:` `4x7p(A) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTGTYI` `______________________________________________________________________72_______________________97_____________________12` `1___________________________________________________175_179__________________________208________________________________` `4x7r(A) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK` `:` `4x7p(A) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK` `1___________________________________________________175_179__________________________208________________________________` `_______250___________264______________________________________305_______________________________________________________` `4x7r(A) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV` `:` `4x7p(A) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV` `_______250___________264______________________________________305_______________________________________________________` `________________________________________403______412_________________________________________________________________480` `4x7r(A) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST` `:` `4x7p(A) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST` `________________________________________403______412_________________________________________________________________480` `_____________` `4x7r(A) : ESILEKWLNLFNS` `:` `4x7p(A) : ESILEKWLNLFNS` `_____________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	9.5
Translation (A)	-0.2
Closure (%)	86.2
Bending Residues ( green )	128 - 147 177 - 178 182 - 183 189 - 197 233 - 234 260 - 261 301 - 302 315 - 316 329 - 330
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

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