T-Cell Receptor Alpha Chain V Region

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T-Cell Receptor Alpha Chain V Region
  Conformer 1
(PDB)
1oga (D)
  Conformer 2
(PDB)
2cdf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 108 1.01   5 - 112
2 76 0.98   113 - 188

Sequence


           ______________________________________________________________________________________________________________112_______ 
 1oga(D) : qLLEQSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGA--GSQ-GNLIFGKGTKLSVKPNIQNPDPA 
         :                                                                                                                          
 2cdf(A) : NQVEQSPQFLSIQEGENLTVYCNSSSVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGADRGSTLGRLYFGRGTQLTVWPDIQNPDPA 
           ______________________________________________________________________________________________________________115_______ 

           __________________________________________________________________________________                                       
 1oga(D) : VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS                                       
         :                                                                                                                          
 2cdf(A) : VYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNN***********                                       
           __________________________________________________________________________________                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.4
Translation
(A)
0.8
Closure
(%)
51.2
Bending Residues
( green )
  112 - 113
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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