Transcriptional Activator Protein Trar

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Activator Protein Trar
  Conformer 1
(PDB) 		1l3l (C)
  Conformer 2
(PDB) 		1h0m (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 0.79   4 - 161
2 60 3.53   162 - 232

Sequence


           ________________________________________________________________________________________________________________________ 
 1l3l(C) : QHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTA 
         :                                                                                                                          
 1h0m(D) : QHWLDKLTDLAAIEGDECILKTGLADIADHFGFTGYAYLHIQHRHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTA 
           ________________________________________________________________________________________________________________________ 

           ________________________________159_________________________________________________________________________             
 1l3l(C) : NGFsfTaSDKPVIDLDREIDAVAAAATIGQIHARISFL---------aWLDPKEATYLRWIAVGKTeEIADVEGVKYNSVRVKLREAkRFDVRSKAHLTALAIRRKLI             
         :                                                                                                                          
 1h0m(D) : NGFsfTaSDKPVID----iDAVAAAATIGQIHARISFLRTTPTAEDAAWLDPKEATYLRWIAVGKTeEIADVEGVKYNSVRVKLREAkRFDVRSKAHLTALAIRRKLI             
           ________________________________159_________________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		152.3
Translation
(A) 		17.3
Closure
(%) 		74.1
Bending Residues
( green ) 		  159 - 175
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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