Transport Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transport Protein
  Conformer 1
(PDB) 		2ghi (A)
  Conformer 2
(PDB) 		2ghi (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 155 0.68   5 - 98   170 - 183   203 - 251
2 83 1.1   99 - 169   190 - 202

Sequence


           ______________________________________________________________________________________________97________________________ 
 2ghi(A) : LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 
         :                                                                                                                          
 2ghi(B) : LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDAT 
           ______________________________________________________________________________________________97________________________ 

           _____________________________________________169________180___________________202_______________________________________ 
 2ghi(A) : DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 
         :                                                                                                                          
 2ghi(B) : DEEVIKATKSAQLYDFIEALPKKWDTIVGNK-mKLSGGERQRIAIARCLLKDPKIVIFDEATS--dSKTEYLFQKAVEDLRKNRTLIIIAHR--tISSAESIILLNKGKIVEKGTHKDLL 
           _____________________________________________169________180___________________202_______________________________________ 

           _______________                                                                                                          
 2ghi(A) : KLNGEYAEMWNMQSG                                                                                                          
         :                                                                                                                          
 2ghi(B) : KLNGEYAEMWNMQ**                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.8
Translation
(A) 		0.2
Closure
(%) 		54.4
Bending Residues
( green ) 		  97 - 104
  169 - 170
  180 - 190
  202 - 207
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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