Transcriptional Regulator, Tetr Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator, Tetr Family
  Conformer 1
(PDB)
1z0x (A)
  Conformer 2
(PDB)
1z0x (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 84 0.5   8 - 65   68 - 68   95 - 123
2 77 0.71   66 - 67   69 - 94   124 - 169   200 - 206

Sequence


           ___________________________________________________________65__________________________94________________________123____ 
 1z0x(A) : *KLSKDTIIAAAFSLLEKSPTLEQLSrKVAKQLGVQAPAIYWYFKNKQALLQSaEAIEEHFQEPALCGEWYSDLLAFeNYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQgILREAGFSP 
         :                                                                                                                          
 1z0x(B) : PKLSKDTIIAAAFSLLEKSPTLEQLSrKVAKQLGVQAPAIYWYFKNKQALLQSaEAIEEHFQEPALCGEWYSDLLAFeNYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQgILREAGFSP 
           ___________________________________________________________65__________________________94________________________123____ 

           _______________________________________________________________________________________                                  
 1z0x(A) : EtHLAVTSLQHLLFGidATEEKQLVSQVLNGDDYLKEQVLHkQYVSDNELTYeESIQFhSIHQKSAFIQAVKTYLDGLQADNTSSSK                                  
         :                                                                                                                          
 1z0x(B) : EtHLAVTSLQHLLFGidATEEKQLVSQVLNGDDYLKEQVLHkQYVSDNELTYeESIQFR-iHQKSAFIQAVKTYLDGLQAD******                                  
           _______________________________________________________________________________________                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.0
Translation
(A)
0.1
Closure
(%)
40.4
Bending Residues
( green )
  65 - 69
  94 - 95
  123 - 124
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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