Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator
  Conformer 1
(PDB)
2g7u (A)
  Conformer 2
(PDB)
2g7u (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 171 0.46   79 - 253
2 68 0.38   11 - 78

Sequence


           ________________________________________________________________________78______________________________________________ 
 2g7u(A) : DRDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAApRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIs 
         :                                                                                                                          
 2g7u(C) : ****IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLSIGQHYSESHALIEAApRLLEVAEKTQESASLGVLDGADVVYAARVPVRRIs 
           ________________________________________________________________________78______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2g7u(A) : INVSVGTRVPAYATSgRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAA 
         :                                                                                                                          
 2g7u(C) : INVSVGTRVPAYATSgRALLAWAPADVVERVVAESTFQKLGPETIGTAAELERELAKVREQGFALTSEELEKGLISLAAPVHDAGGTVVGVVACSTSSARNTPAQFREQAVPCVLAAAAA 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 2g7u(A) : LSADgFA*                                                                                                                 
         :                                                                                                                          
 2g7u(C) : LSADgFAG                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.4
Translation
(A)
0.4
Closure
(%)
48.7
Bending Residues
( green )
  78 - 79
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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