Troponin C

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Troponin C
  Conformer 1
(PDB)
1ytz (C)
  Conformer 2
(PDB)
1yv0 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 50 2.56   5 - 34   39 - 40   65 - 82
2 28 2.66   35 - 38   41 - 64
3 66 0.91   83 - 159

Sequence


           _____________________________33____________________________63_________________82________________________________________ 
 1ytz(C) : TDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR 
         :                                                                                                                          
 1yv0(C) : TDQQAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ-----------eLANCFRIFDKNADGFIDIEELGEILR 
           _____________________________33____________________________64_________________83________________________________________ 

           _______________________________________                                                                                  
 1ytz(C) : ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ                                                                                  
         :                                                                                                                          
 1yv0(C) : ATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMMEGVQ                                                                                  
           _______________________________________                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
38.8
Translation
(A)
2.8
Closure
(%)
93.0
Bending Residues
( green )
  33 - 41
  63 - 65
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
34.4
Translation
(A)
0.1
Closure
(%)
51.4
Bending Residues
( green )
  82 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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