Type IIe Restriction Endonuclease Naei

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Type IIe Restriction Endonuclease Naei
  Conformer 1
(PDB)
1ev7 (A)
  Conformer 2
(PDB)
1iaw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 1.09   12 - 176   227 - 228
2 124 1.44   177 - 226   229 - 309

Sequence


           ________________________________________________________________________________________________________________________ 
 1ev7(A) : EPDDDLERVRATLYSLDPDGDRTAGVLRDTLDQLYDGQRTGRWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYEIAGVQVDCKFSMSQGAWMLPPESIGHICLVIWASDQQCAWT 
         :                                                                                                                          
 1iaw(A) : EPDDDLERVRATLYSLDPDGDRTAGVLRDTLDQLYDGQRTGRWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYEIAGVQVDCKFSMSQGAWMLPPESIGHICLVIWASDQQCAWT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________176_______________________________________________226_______________________ 
 1ev7(A) : AGLVKVIPQFLGTANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRDQIFSAKS----qHGQARVNELFRRVHGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIIL 
         :                                                                                                                          
 1iaw(A) : AGLVKVIPQFLGTANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRVHGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIIL 
           ____________________________________________176_______________________________________________226_______________________ 

           ________________________________________________________________                                                         
 1ev7(A) : GHQD---kVANDLGLPVPRKGQVVAARVVPADEGDQRQTAEIQGRRWAVAVPGDPIVEAPVV**                                                         
         :                                                                                                                          
 1iaw(A) : GHQDNDPKVANDLGLPVPRKGQVVAARVVPADEGDQRQTAEIQGRRWAVAVPGDPIVEAPVVPR                                                         
           ________________________________________________________________                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.0
Translation
(A)
-0.3
Closure
(%)
84.1
Bending Residues
( green )
  176 - 177
  226 - 229
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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