Type IIe Restriction Endonuclease Naei

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Type IIe Restriction Endonuclease Naei
  Conformer 1
(PDB) 		1iaw (A)
  Conformer 2
(PDB) 		1ev7 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 147 0.53   12 - 44   64 - 177
2 142 1.3   45 - 63   178 - 309

Sequence


           _________________________________44_________________63__________________________________________________________________ 
 1iaw(A) : EPDDDLERVRATLYSLDPDGDRTAGVLRDTLDQLYDGQRTGRWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYEIAGVQVDCKFSMSQGAWMLPPESIGHICLVIWASDQQCAWT 
         :                                                                                                                          
 1ev7(B) : EPDDDLERVRATLYSLDPDGDRTAGVLRDTLDQLYDGQRTGRWNFDQLHKTEKTHMGTLVEINLHREFQFGDGFETDYEIAGVQVDCKFSMSQGAWMLPPESIGHICLVIWASDQQCAWT 
           _________________________________44_________________63__________________________________________________________________ 

           _____________________________________________177________________________________________________________________________ 
 1iaw(A) : AGLVKVIPQFLGTANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRDQIFSAKSSRGNQHGQARVNELFRRVHGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIIL 
         :                                                                                                                          
 1ev7(B) : AGLVKVIPQFLGTANRDLKRRLTPEGRAQVVKLWPDHGKLQENLLLHIPGDVRDQIFSAKS----qHGQARVNELFRRVHGRLIGRAVIATVAQQDDFMKRVRGSGGARSILRPEGIIIL 
           _____________________________________________177________________________________________________________________________ 

           ________________________________________________________________                                                         
 1iaw(A) : GHQDNDPKVANDLGLPVPRKGQVVAARVVPADEGDQRQTAEIQGRRWAVAVPGDPIVEAPVVPR                                                         
         :                                                                                                                          
 1ev7(B) : GHQD-----aNDLGLPVPRKGQVVAARVVPADEGDQRQTAEIQGRRWAVAVPGDPIVEAPVV**                                                         
           ________________________________________________________________                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.0
Translation
(A) 		-0.1
Closure
(%) 		55.9
Bending Residues
( green ) 		  44 - 45
  63 - 68
  177 - 178
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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