Ubiquitin Carboxyl-Terminal Hydrolase 7

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ubiquitin Carboxyl-Terminal Hydrolase 7
  Conformer 1
(PDB)
2f1z (B)
  Conformer 2
(PDB)
1nbf (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 294 1.93   211 - 329   343 - 369   393 - 550
2 36 2.01   330 - 342   370 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 2f1z(B) : TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKG 
         :                                                                                                                          
 1nbf(B) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2f1z(B) : FIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRV 
         :                                                                                                                          
 1nbf(B) : *************************KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRV 
           ________________________________________________________________________________________________________________________ 

           ________________________329__________342________________________369____________________392______________________________ 
 2f1z(B) : LLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 
         :                                                                                                                          
 1nbf(B) : LLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 
           ________________________329__________342________________________369____________________392______________________________ 

           ________________________________________________________________________________________________________________________ 
 2f1z(B) : DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYG----------cTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVE 
         :                                                                                                                          
 1nbf(B) : DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVE 
           ________________________________________________________________________________________________________________________ 

           ____________                                                                                                             
 2f1z(B) : RLQEEKRIEAQ*                                                                                                             
         :                                                                                                                          
 1nbf(B) : RLQEEKRIEAQK                                                                                                             
           ____________                                                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
31.2
Translation
(A)
-0.8
Closure
(%)
64.1
Bending Residues
( green )
  329 - 330
  342 - 344
  369 - 370
  392 - 393
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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