Udp-N-Acetylglucosamine 2-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine 2-Epimerase
  Conformer 1
(PDB)
1vgv (D)
  Conformer 2
(PDB)
1f6d (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 221 0.36   6 - 179   296 - 302   306 - 309   314 - 315   317 - 323   338 - 370
2 135 0.81   180 - 295   303 - 305   310 - 313   316 - 316   324 - 337

Sequence


           ________________________________________________________________________________________________________________________ 
 1vgv(D) : KVLTVFGTRPEAIKaPLVHALAKDPFFEAKVCVTAQHRElDQVLKLFSIVPDYDLNIqPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 
         :                                                                                                                          
 1f6d(A) : KVLTVFGTRPEAIKaPLVHALAKDPFFEAKVCVTAQHRElDQVLKLFSIVPDYDLNIqPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________175______________________________________________________________________ 
 1vgv(D) : LYSPWPEEANRTLTGHLAyHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVsSDKLRSELAANYPFIDPDKKiLVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL 
         :                                                                                                                          
 1f6d(A) : LYSPWPEEANRTLTGHLAyHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVsSDKLRSELAANYPFIDPDKKiLVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL 
           _______________________________________________175______________________________________________________________________ 

           ____________________________________________295____302_______313_____________________337________________________________ 
 1vgv(D) : NPNVREPVNRILGHVKNVILIDPQEYLPFVWLnHAWLILTDSGGIQEEAPSLGKPVLVrDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAsRAHNPYGDGQACSRILEALK 
         :                                                                                                                          
 1f6d(A) : NPNVREPVNRILGHVKNVILIDPQEYLPFVWLnHAWLILTDSGGIQEEAPSLGKPVLVrDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAsRAHNPYGDGQACSRILEALK 
           ____________________________________________295____302_______313_____________________337________________________________ 

           ______                                                                                                                   
 1vgv(D) : NNRI**                                                                                                                   
         :                                                                                                                          
 1f6d(A) : NNRISL                                                                                                                   
           ______                                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.7
Translation
(A)
0.1
Closure
(%)
87.0
Bending Residues
( green )
  175 - 191
  295 - 297
  302 - 303
  305 - 310
  313 - 324
  337 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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