Unknown Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Unknown Protein
  Conformer 1
(PDB) 		2gm3 (B)
  Conformer 2
(PDB) 		2gm3 (C)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 110 0.12   12 - 52   91 - 168
2 20 1.81   53 - 90

Sequence


           ___________________________________________50___________________________90______________________________________________ 
 2gm3(B) : PTKVvAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVsIYASPEDFRD-------gLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG 
         :                                                                                                                          
 2gm3(C) : PTKVvAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVsIYASPEDFRDrQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLG 
           ___________________________________________50___________________________90______________________________________________ 

           ______________________________                                                                                           
 2gm3(B) : tVSAFCVKHAECPVtIKRNADETPSDPAD*                                                                                           
         :                                                                                                                          
 2gm3(C) : tVSAFCVKHAECPVtIKRNADETPSDPADD                                                                                           
           ______________________________                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.9
Translation
(A) 		0.7
Closure
(%) 		83.3
Bending Residues
( green ) 		  50 - 53
  90 - 91
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download