Vascular Apoptosis-Inducing Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vascular Apoptosis-Inducing Protein 1
  Conformer 1
(PDB) 		2ero (B)
  Conformer 2
(PDB) 		2ero (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 32 0.45   405 - 436
2 217 0.32   188 - 404
3 25 0.46   437 - 460   475 - 475
4 26 0.41   461 - 474   476 - 485   492 - 493
5 121 0.44   486 - 491   494 - 608

Sequence


           ________________________________________________________________________________________________________________________ 
 2ero(B) : SNLTPEQQRYLNAKKYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLG 
         :                                                                                                                          
 2ero(A) : SNLTPEQQRYLNAKKYVKLFLVADYIMYLKYGRNLTAVRTRMYDIVNVITPIYHRMNIHVALVGLEIWSNTDKIIVQSSADVTLDLFAKWRATDLLSRKSHDNAQLLTGINFNGPTAGLG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________399_________________________ 
 2ero(B) : YLGGICNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSPRT 
         :                                                                                                                          
 2ero(A) : YLGGICNTMYSAGIVQDHSKIHHLVAIAMAHEMGHNLGMDHDKDTCTCGTRPCVMAGALSCEASFLFSDCSQKDHREFLIKNMPQCILKKPLKTDVVSPAVCGNYFVEVGEECDCGSPRT 
           ____________________________________________________________________________________________399_________________________ 

           _________436_____________________460___________474________485___491_____________________________________________________ 
 2ero(B) : CRDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQN 
         :                                                                                                                          
 2ero(A) : CRDPCCDATTCKLRQGAQCAEGLCCDQCRFKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCPIMADQCIALFGPGATVSQDACFQFNREGNHYGYCRKEQN 
           _________436_____________________460___________474________485___491_____________________________________________________ 

           __________________________________________________________________                                                       
 2ero(B) : TKIACEPQDVKCGRLYCFPNSPENKNPCNIYYSPNDEDKGMVLPGTKCADRKACSNGQCVDVTTPY                                                       
         :                                                                                                                          
 2ero(A) : TKIACEPQDVKCGRLYCFPNSPENKNPCNIYYSPNDEDKGMVLPGTKCADRKACSNGQCVDVTTPY                                                       
           __________________________________________________________________                                                       

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 17.6 0.0 53.2   399 - 406 Bending Region Analysis
1 3 6.6 0.4 22.4   436 - 437 Bending Region Analysis
4 3 8.6 0.0 64.1   460 - 462   474 - 476 Bending Region Analysis
4 5 9.9 0.0 63.1   485 - 486   491 - 494 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 4

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 5

Conformer 2 Contact:
Residue 5 ———› Residue 4

Movement classification:

No Contacts

PyMOL Script

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