Potassium Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Potassium Channel
  Conformer 1
(PDB) 		2a0l (A)
  Conformer 2
(PDB) 		1orq (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 31 2.84   59 - 89
2 128 1.66   26 - 58   141 - 235
3 46 3.56   95 - 140

Sequence


           _____________________________________56_______________________________89____________________________________________136_ 
 2a0l(A) : ******HPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKF 
         :                                                                                                                          
 1orq(C) : IGDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKF 
           _____________________________________56_______________________________89____________________________________________136_ 

           _______________________________________________________________________________________________________                  
 2a0l(A) : LSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK***                  
         :                                                                                                                          
 1orq(C) : LSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKILV                  
           _______________________________________________________________________________________________________                  

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 43.7 3.6 90.7   56 - 59 Bending Region Analysis
1 3 35.2 -10.1 98.0   89 - 97 Bending Region Analysis
2 3 48.5 -7.5 96.5   136 - 146 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts
DNA-directed RNA polymerase

PyMOL Script

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