W224h Variant Of S. Enterica Rmla

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name W224h Variant Of S. Enterica Rmla
  Conformer 1
(PDB)
1mp4 (B)
  Conformer 2
(PDB)
1h5r (C)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 155 0.74   7 - 7   45 - 54   61 - 68   79 - 110   117 - 117   120 - 222
2 123 0.94   8 - 44   55 - 60   69 - 78   111 - 116   118 - 119   223 - 284

Sequence


           ______7___________________________________44________54____60______68________78_____________________________110___116____ 
 1mp4(B) : MKTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCALVLGDNIFYGHDLP 
         :                                                                                                                          
 1h5r(C) : *KMRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLGDNIFYGHDLP 
           ______7___________________________________44________54____60______68________78_____________________________110___116____ 

           ________________________________________________________________________________________________219_____________________ 
 1mp4(B) : KLMEAAVNKESGATVFAYHVNDPERYGVVEFDQAGTAVSLEEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAHLDTGTHQSLIEASNFI 
         :                                                                                                                          
 1h5r(C) : KLMEAAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISLEEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFI 
           ________________________________________________________________________________________________219_____________________ 

           ___________________________________________________                                                                      
 1mp4(B) : ATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPLSKNDYGKYLLKMV**                                                                      
         :                                                                                                                          
 1h5r(C) : ATIEERQGLKVSCPEEIAFRKGFIDVEQVRKLAVPLIKNNYGQYLYKMTKD                                                                      
           ___________________________________________________                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.2
Translation
(A)
-0.2
Closure
(%)
100.0
Bending Residues
( green )
  7 - 8
  44 - 45
  54 - 55
  60 - 61
  68 - 69
  78 - 79
  110 - 111
  116 - 120
  219 - 223
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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