Atp-Dependent Metalloprotease Ftsh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Metalloprotease Ftsh
  Conformer 1
(PDB)
1iy0 (A)
  Conformer 2
(PDB)
2cea (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 162 1.03   154 - 325
2 67 0.73   326 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 1iy0(A) : *TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRnD 
         :                                                                                                                          
 2cea(E) : pSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRH--- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________324_____________________________________________________________________ 
 1iy0(A) : EREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 
         :                                                                                                                          
 2cea(E) : eREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAI 
           ________________________________________________329_____________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iy0(A) : S*********************************************************************************************************************** 
         :                                                                                                                          
 2cea(E) : DRVIAlLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIkYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKlRNYSEEVASKID 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________                                                                         
 1iy0(A) : ************************************************                                                                         
         :                                                                                                                          
 2cea(E) : EEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILS                                                                         
           ________________________________________________                                                                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
36.5
Translation
(A)
-0.4
Closure
(%)
9.1
Bending Residues
( green )
  324 - 327
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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