Atp-Dependent Metalloprotease Ftsh

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Metalloprotease Ftsh
  Conformer 1
(PDB)
1iy0 (A)
  Conformer 2
(PDB)
4ww0 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 164 1.46   150 - 323
2 69 0.74   324 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 1iy0(A) : *****TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 
         :                                                                                                                          
 4ww0(B) : HMAKVYIEpKVTFKDVAGIEEVKEEVKEIIEYLKDPVKFQKLGGRPPKGVLLYGEPGVGKTLLAKAIAGEAHVPFISVSGSDFVEMFVGVGAARVRDLFETAKKHAPCMIFIDEIDAVGR 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________323__________________________________________________________________ 
 1iy0(A) : KRnDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 
         :                                                                                                                          
 4ww0(B) : ---dEREQTLNQLLVEMDGFDTSDGIIVIAATNRPDILDPALLRPGRFDRQIFIPKPDVRGRYEILKVHARNKKLAKDVDLEFVARATPGLTGADLENLLNEAALLAARKGKEEITMEEI 
           ___________________________________________________323__________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1iy0(A) : EEAAS******************************************************************************************************************* 
         :                                                                                                                          
 4ww0(B) : EEALDRImTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALeDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKVGPIAIRdT 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________                                                     
 1iy0(A) : ********************************************************************                                                     
         :                                                                                                                          
 4ww0(B) : SPDLLREIDEEVRRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKETITCEEFVEVFKLYGIELKDKCK                                                     
           ____________________________________________________________________                                                     

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
42.0
Translation
(A)
-0.1
Closure
(%)
4.3
Bending Residues
( green )
  323 - 326
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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