PROTEIN (FERREDOXIN
Ligand-induced domain movement details

Jmol view of liganded conformation 1

Domain Movement

domain 1 is binding domain(fixed in space) domain 2 is binding domain(fixed in space)

Sequence


           __________________________________________________ 
 1qfy(B) : *SKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEV 
         :                                                    
 1sm4(B) : ISKKQDEGVVVNKFRPKEPYIGRCLLNTKITGDDAPGETWHMVFSTEGEI 
           __________________________________________________ 

           __________________________________________________ 
 1qfy(B) : PYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRL 
         :                                                    
 1sm4(B) : PYREGQSIGVIADGVDANGKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 
           __________________________________________________ 

           __________________________________________________ 
 1qfy(B) : VYTNDAGEVVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIML 
         :                                                    
 1sm4(B) : VYTNDKGEEVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIML 
           __________________________________________________ 

           __________________________________________________ 
 1qfy(B) : GTGTGIAPFRSFLWKMFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEK 
         :                                                    
 1sm4(B) : GTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEK 
           __________________________________________________ 

           __________________________________________________ 
 1qfy(B) : MKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLKKDNTF 
         :                                                    
 1sm4(B) : MKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWTLLKKDNTF 
           __________________________________________________ 

           ____________777___________________799_________     
 1qfy(B) : VYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVS     
         :                                                    
 1sm4(B) : VYMCGLKGMEQGIDDIMSSLAAKEGIDWADYKKQLKKAEQWNVEVY     
           ___________1331__________________1353_________     

Details

  Property   Value
 Conformer 1 1qfy(B)
 Conformer 2 1sm4(B)
 Radius gyration for conformer 1 19.78 A
 Radius gyration for conformer 2 19.48 A
 EC Number 1.18.1.2  
Click here to see the DynDom results or the famliy
 Trigger ligands NAP810
 Trigger ligands in which conformation Conformation  1
 Conformaton with trigger ligands is compact No
 Spanning ligands No
 Residues in enzyme contacting ligands ARG729  CYS766  GLN742  GLU806  GLY665  GLY667  GLY697  GLY767  GLY770  ILE741  LEU768  LYS610  LYS738  MET771  PRO699  SER590  SER728  SER808  THR664  THR666  TYR740  VAL698 
 Residues in extended bending regions contacting ligands Null
 Residues in extended bending regions making H-bonds or salt-bridges with ligands Null
  Residues in extended bending regions with an H-bond between its main chain and ligands Null
Click here to see the details of H-bonds between ligands and enzyme in PDF format generated by LIGPLOT