UDP-N-ACETYLMURAMATE-L-ALANINE LIGASE
Ligand-induced domain movement details

Jmol view of liganded conformation 1

Domain Movement

domain 1 is binding domain(fixed in space) domain 2 is binding domain(fixed in space)

Sequence


           __________________________________________________ 
 1p3d(A) : IIPErRVQQIHFIGIGGAG-sGIAEILLNEGYQISGSDIADGVVTQRLAQ 
         :                                                    
 1gqq(B) : *******QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ 
           __________________________________________________ 

           _____________________________________________109__ 
 1p3d(A) : AGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQ-l 
         :                                                    
 1gqq(B) : AGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQML 
           _____________________________________________109__ 

           __________________________________________________ 
 1p3d(A) : AEI-rFRHGIAVAGTHGKTTTTAi--SiYTQAKLDPTFVNGGLVKSAGKN 
         :                                                    
 1gqq(B) : AEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFV----------- 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : AHLGASRYLIAEADESDASFLHLQP-vSVVTN-ePDHdTYEGDFEK-kAT 
         :                                                    
 1gqq(B) : ------rYLIAEADE----fLHLQPMVSVVTNMEP--------fEKMKAT 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : YVKFLHNLPFYGLAV-cADDPVL-eLVPKVGRQVITYGFSEQADYRIEDY 
         :                                                    
 1gqq(B) : YVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDY 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : EQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEA 
         :                                                    
 1gqq(B) : EQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEA 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : ILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAARE 
         :                                                    
 1gqq(B) : ILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAARE 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : GWGDKRIV-iFQPHRYSRTRDLFDDFVQVLSQVDALI-lDVYAAGEAPIV 
         :                                                    
 1gqq(B) : GWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIV 
           __________________________________________________ 

           __________________________________________________ 
 1p3d(A) : GADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSV 
         :                                                    
 1gqq(B) : GADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSV 
           __________________________________________________ 

           _____________                                      
 1p3d(A) : SKISRGLAESW**                                      
         :                                                    
 1gqq(B) : SKISRGLAESWKN                                      
           _____________                                      

Details

  Property   Value
 Conformer 1 1p3d(A)
 Conformer 2 1gqq(B)
 Radius gyration for conformer 1 22.52 A
 Radius gyration for conformer 2 24.05 A
 EC Number 6.3.2.8  
Click here to see the DynDom results or the famliy
 Trigger ligands UMA602
 Trigger ligands in which conformation Conformation  1
 Conformaton with trigger ligands is compact Yes
 Spanning ligands Yes
 Residues in enzyme contacting ligands ALA29  ALA459  ALA86  ARG107  ARG377  ARG380  ASP175  ASP49  GLU173  GLY152  GLY25  GLY27  GLY28  GLY30  HIS198  HIS348  HIS376  HIS70  ILE50  ILE87  SER177  SER84  SER85  TYR346 
 Residues in extended bending regions contacting ligands ARG107 
 Residues in extended bending regions making H-bonds or salt-bridges with ligands Null
  Residues in extended bending regions with an H-bond between its main chain and ligands Null
Click here to see the details of H-bonds between ligands and enzyme in PDF format generated by LIGPLOT