DNA-directed RNA polymerase II 140 kDa polype

Protein Family Details

  Property   Value
 Name DNA-directed RNA polymerase II 140 kDa polype
Family ID 22_m
First Chain 2b63 (B)
  No of Chains 37
  No of Clusters 5
  No of Rep. Chains 31
  No of Dimensions 4
No of Domain Movements 2

Clusters

Cluster ID Diameter (A) No of Chains Representative Members
1 0.0 1 1r5u(B) 1r5u(B) 
2 0.0 1 1i3q(B) 1i3q(B) 
3 0.0 1 2nvy(B) 2nvy(B) 
4 0.21 7 1twf(B) 1i50(B)  1k83(B)  1twa(B)  1twc(B)  1twf(B)  1twg(B)  1twh(B) 
5 1.22 27 Extended 1i6h(B)  1nik(B)  1nt9(B)  1pqv(B)  1r9s(B)  1r9t(B)  1sfo(B)  1wcm(B)  1y1v(B)  1y1w(B)  1y1y(B)  1y77(B)  2b63(B)  2b8k(B)  2e2h(B)  2e2i(B)  2e2j(B)  2ja5(B)  2ja6(B)  2ja7(B)  2ja7(N)  2ja8(B)  2nvq(B)  2nvs(B)  2nvt(B)  2nvx(B)  2nvz(B) 

Dimensions

Dimension ID Chain 1 Chain 2 Dyndom Run
1 (Vector: v1) 1i3q (B) 2nvz (B) true
2 (Vector: v2) 1i3q (B) 2nvy (B) true
3 (Vector: v3) 2nvz (B) 2b63 (B) false
4 (Vector: v4) 2b63 (B) 1pqv (B) false

Associated Chains for 1-dimension

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2e2h (B) DNA-directed RNA polymerase II 140 kDa polype 1096 3.95 5 0.98v1
1r9t (B) DNA-directed RNA polymerase II 140 kDa polype 1106 3.5 5 0.94v1
2nvx (B) DNA-directed RNA polymerase II 140 kDa polype 1114 3.6 5 0.94v1
2e2j (B) DNA-directed RNA polymerase II 140 kDa polype 1105 3.5 5 0.92v1
2e2i (B) DNA-directed RNA polymerase II 140 kDa polype 1143 3.41 5 0.94v1
2nvt (B) DNA-directed RNA polymerase II 140 kDa polype 1114 3.36 5 0.93v1
2nvs (B) DNA-directed RNA polymerase II 140 kDa polype 1121 3.4 5 0.95v1
2nvz (B) DNA-directed RNA polymerase II 140 kDa polype 1096 4.3 5 1.0v1
1i3q (B) DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPT 1083 3.1 2 0

Associated Chains for 2-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
2nvq (B) DNA-directed RNA polymerase II 140 kDa polype 1114 2.9 5 0.97v1 + (-0.14)v2
2nvy (B) DNA-directed RNA polymerase II 140 kDa polype 1094 3.4 3 1.0v2
1i3q (B) DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPT 1083 3.1 2 0

Associated Chains for 3-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
1i6h (B) DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPT 1097 3.3 5 1.0v1 + 0.13v2 + 0.47v3
1sfo (B) DNA-directed RNA polymerase II 140 kDa polype 1106 3.61 5 1.05v1 + 0.42v3
1nt9 (B) DNA-directed polymerase II SECOND LARGEST SUB 1089 4.2 5 1.0v1 + 0.13v2 + 0.47v3
1nik (B) ORF YOR151c 1097 4.1 5 1.0v1 + 0.13v2 + 0.47v3
1r9s (B) DNA-directed RNA polymerase II 140 kDa polype 1097 4.25 5 1.0v1 + 0.13v2 + 0.47v3
1wcm (B) DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST 1097 3.8 5 1.01v1 + 0.13v2 + 0.75v3
1y77 (B) DNA-directed RNA polymerase II 140 kDa polype 1112 4.5 5 1.0v1 + 0.14v2 + 0.75v3
1y1w (B) DNA-directed RNA polymerase II 140 kDa polype 1112 4 5 0.98v1 + 0.14v2 + 0.68v3
2ja7 (B) DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE 1115 3.8 5 1.01v1 + 0.16v2 + 0.67v3
2ja7 (N) DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE 1115 3.8 5 1.01v1 + 0.17v2 + 0.66v3
2ja8 (B) DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE 1115 3.8 5 1.01v1 + 0.15v2 + 0.65v3
2ja5 (B) DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE 1115 3.8 5 1.0v1 + 0.15v2 + 0.62v3
2ja6 (B) DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPE 1115 4 5 1.01v1 + 0.17v2 + 0.7v3
2b8k (B) DNA-directed RNA polymerase II 140 kDa polype 1114 4.15 5 1.0v1 + 0.04v2 + 0.55v3
1y1y (B) DNA-directed RNA polymerase II 140 kDa polype 1112 4 5 0.97v1 + 0.04v2 + 0.71v3
1y1v (B) DNA-directed RNA polymerase II 140 kDa polype 1112 3.8 5 0.96v1 + 0.05v2 + 0.7v3
2b63 (B) DNA-directed RNA polymerase II 140 kDa polype 1112 3.8 5 1.0v1 + 1.0v3
2nvz (B) DNA-directed RNA polymerase II 140 kDa polype 1096 4.3 5 1.0v1

Associated Chains for 4-dimensions

Chain ID Protein Name Sequence Length Resolution Cluster ID Projection
1r5u (B) DNA-directed RNA polymerase II 140 kDa polype 1097 4.5 1 0.95v1 + 0.02v2 + 0.29v3 + 0.26v4
1twf (B) DNA-directed RNA polymerase II 140 kDa polype 1094 2.3 4 0.03v1 + 0.45v2 + (-0.12)v3 + (-0.42)v4
1pqv (B) DNA-directed RNA polymerase II 140 kDa polype 1103 3.8 5 1.0v1 + 1.0v3 + 1.0v4
2b63 (B) DNA-directed RNA polymerase II 140 kDa polype 1112 3.8 5 1.0v1 + 1.0v3