Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB)
2fxu (A)
  Conformer 2
(PDB)
2hf4 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 201 0.51   142 - 342
2 114 0.37   10 - 30   71 - 141   343 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2fxu(A) : **ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVdSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 
         :                                                                                                                          
 2hf4(A) : DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRk---DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 
           ________________________________________________________________________________________________________________________ 

           __________141___________________________________________________________________________________________________________ 
 2fxu(A) : VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI 
         :                                                                                                                          
 2hf4(A) : TPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTEEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELKDGQVI 
           __________141___________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________342__________________________ 
 2fxu(A) : TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS 
         :                                                                                                                          
 2hf4(A) : TIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS 
           ___________________________________________________________________________________________342__________________________ 

           _______                                                                                                                  
 2fxu(A) : IVH****                                                                                                                  
         :                                                                                                                          
 2hf4(A) : IVHRKCF                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.7
Translation
(A)
-0.2
Closure
(%)
87.4
Bending Residues
( green )
  141 - 142
  342 - 343
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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