Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB) 		1j6z (A)
  Conformer 2
(PDB) 		1t44 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 138 0.76   9 - 35   69 - 144   165 - 170   340 - 369
2 21 0.77   36 - 68
3 189 0.83   145 - 164   171 - 339

Sequence


           ______________________________35_______________________________68_______________________________________________________ 
 1j6z(A) : ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
         :                                                                                                                          
 1t44(A) : **TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP------------dSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIM 
           ______________________________35_______________________________68_______________________________________________________ 

           __________________144_________________164___170_________________________________________________________________________ 
 1j6z(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
         :                                                                                                                          
 1t44(A) : FETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP 
           __________________144_________________164___170_________________________________________________________________________ 

           _____________________________________________________________________________________________339________________________ 
 1j6z(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
         :                                                                                                                          
 1t44(A) : DGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYD 
           _____________________________________________________________________________________________339________________________ 

           ____________                                                                                                             
 1j6z(A) : EAGPSIVHR***                                                                                                             
         :                                                                                                                          
 1t44(A) : EAGPSIVHRKCF                                                                                                             
           ____________                                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.8
Translation
(A) 		0.7
Closure
(%) 		87.3
Bending Residues
( green ) 		  35 - 36
  68 - 71
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		8.1
Translation
(A) 		0.4
Closure
(%) 		16.4
Bending Residues
( green ) 		  144 - 145
  164 - 165
  170 - 171
  339 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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