Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB)
1dvr (B)
  Conformer 2
(PDB)
1ak2  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 171 1.03   6 - 129   170 - 217
2 40 1.52   130 - 169

Sequence


           ________________________________________________________________________________________________________________________ 
 1dvr(B) : SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 
         :                                                                                                                          
 1ak2    : *PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNL-ETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSI 
           ________________________________________________________________________________________________________________________ 

           ______129___________________________________167_______________________________________________________                   
 1dvr(B) : DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN**                   
         :                                                                                                                          
 1ak2    : PDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS                   
           ______140___________________________________178_______________________________________________________                   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.7
Translation
(A)
-1.5
Closure
(%)
98.8
Bending Residues
( green )
  129 - 130
  167 - 170
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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