Amine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Amine Dehydrogenase
  Conformer 1
(PDB)
7zbo (C)
  Conformer 2
(PDB)
7zbo (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 265 0.27   10 - 169   204 - 233   263 - 277   290 - 349
2 71 0.99   170 - 203   234 - 262   278 - 289

Sequence


           ________________________________________________________________________________________________________________________ 
 7zbo(C) : SPLRVALYGFGNQNKEMAKMLVERKDVEIVAVISNKSNVGKDFGEVIGLAPQGILVTAGLDAAETLRTTNPQIAMLSTLSTVGDIESQLRACAENKVNVYTIAEELTFSWTSAPEKTKEM 
         :                                                                                                                          
 7zbo(D) : SPLRVALYGFGNQNKEMAKMLVERKDVEIVAVISNKSNVGKDFGEVIGLAPQGILVTAGLDAAETLRTTNPQIAMLSTLSTVGDIESQLRACAENKVNVYTIAEELTFSWTSAPEKTKEM 
           ________________________________________________________________________________________________________________________ 

           ______________________________________168_______________________198________________________225__________________________ 
 7zbo(C) : DELFKEHNVSLIGGGFLDGACCDMARTMAAMMHKIDKLDGGLQYNVDHYGQVLAIAHGVGLfYAENGPGWTSPTSYPKSYVYNMNDWFASAFGLTVIKTEEVKTPTKAPIELYSEAIGRA 
         :                                                                                                                          
 7zbo(D) : DELFKEHNVSLIGGGFLDGACCDMARTMAAMMHKIDKLDGGLQYNVDHYGQVLAIAHGVGLSyAENGPGWTSPTSYPKSYVYNMNDWFASAFGLTVIKTEEVKTPTKAPIELYSEAIGRA 
           ______________________________________168_______________________198________________________225__________________________ 

           ________262___________276__________289______________________________________________________________                     
 7zbo(C) : IPVGQCTGMIVTATTTTEEGVIIVEKQVGKCYEDGDEDMVFMNLEGNPTGGVGFTMKNPPTPAMTNTIAISRMFQTVDAPAGYITTDKLPTMEAYVHGRL                     
         :                                                                                                                          
 7zbo(D) : IPVGQCTGMIVTATTTTEEGVIIVEKQVGKCYEDGDEDMVFMNLEGNPTGGVGFTMKNPPTPAMTNTIAISRMFQTVDAPAGYITTDKLPTMEAYVHGRL                     
           ________262___________276__________289______________________________________________________________                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.0
Translation
(A)
-0.8
Closure
(%)
98.3
Bending Residues
( green )
  168 - 170
  198 - 207
  225 - 234
  262 - 265
  276 - 278
  289 - 291
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download