Apolipoprotein A-II

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Apolipoprotein A-II
  Conformer 1
(PDB)
2ou1 (B)
  Conformer 2
(PDB)
1l6l (2)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 35 3.08   40 - 74
2 32 2.04   6 - 39

Sequence


           _______________________________37________________________________________                                                
 2ou1(B) : EPCVsLVSQY-qTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT*                                                
         :                                                                                                                          
 1l6l(2) : EPCVsLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPATQ                                                
           _______________________________37________________________________________                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
66.9
Translation
(A)
-1.3
Closure
(%)
85.2
Bending Residues
( green )
  37 - 40
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download