Aspartate Aminotransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aspartate Aminotransferase
  Conformer 1
(PDB)
1ivr (A)
  Conformer 2
(PDB)
9aat (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 286 0.43   38 - 320   350 - 352
2 99 0.76   15 - 37   321 - 349   353 - 399

Sequence


           ______________________________32________________________________________________________________________________________ 
 1ivr(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
         :                                                                                                                          
 9aat(A) : SSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF 
           ______________________________34________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ivr(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
         :                                                                                                                          
 9aat(A) : KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________315_______________________________349___________ 
 1ivr(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
         :                                                                                                                          
 9aat(A) : DVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 
           ________________________________________________________________________323_______________________________357___________ 

           _________________________________________                                                                                
 1ivr(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
         :                                                                                                                          
 9aat(A) : QVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.9
Translation
(A)
-0.5
Closure
(%)
100.0
Bending Residues
( green )
  32 - 39
  315 - 321
  349 - 353
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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