Igg 5C8

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Igg 5C8
  Conformer 1
(PDB)
35c8 (L)
  Conformer 2
(PDB)
1v7m (M)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 103 0.65   3 - 106
2 103 0.58   107 - 209

Sequence


           ________________________________________________________________________________________________________106_____________ 
 35c8(L) : DIVLTQSPAIMSASLGERVTMTCTASSSVSSSNLHWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAATYYCHQYHRSPYTFGGGTKLEIKRADAAPTVSIFP 
         :                                                                                                                          
 1v7m(M) : QVVLTQSPGIMSASPGEKVTITCSASSSVSY--MYWFQQKPGTSPKLWIYSTSNLASGVPARFRGSGSGTSYSLTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAPTVSIFP 
           ________________________________________________________________________________________________________105_____________ 

           ______________________________________________________________________________________________                           
 35c8(L) : PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR**                           
         :                                                                                                                          
 1v7m(M) : PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.8
Translation
(A)
0.5
Closure
(%)
91.8
Bending Residues
( green )
  106 - 109
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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