Delta Prime

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Delta Prime
  Conformer 1
(PDB)
1jr3 (E)
  Conformer 2
(PDB)
1xxh (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 167 0.5   32 - 32   164 - 332
2 157 0.4   4 - 31   33 - 163

Sequence


           _____________________________31_________________________________________________________________________________________ 
 1jr3(E) : MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL 
         :                                                                                                                          
 1xxh(E) : *RWYPWLRPDFEKLVASYQAGRGHHALLIQALPG-gDDALIYALSRYLLCQQPQGHKSCGHCRGCQL-qAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL 
           _____________________________31_________________________________________________________________________________________ 

           ________________________________________163_____________________________________________________________________________ 
 1jr3(E) : TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ 
         :                                                                                                                          
 1xxh(E) : TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-sQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ 
           ________________________________________163_____________________________________________________________________________ 

           ______________________________________________________________________________________________                           
 1jr3(E) : APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL                           
         :                                                                                                                          
 1xxh(E) : APARLHWLATLL-dALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL-sVTGINRELLITDLLLRIEHYLQPGVVLPVPHL                           
           ______________________________________________________________________________________________                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
0.1
Closure
(%)
74.4
Bending Residues
( green )
  31 - 34
  163 - 164
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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