Helicase Pcra

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Helicase Pcra
  Conformer 1
(PDB)
2pjr (A)
  Conformer 2
(PDB)
1pjr  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 376 3.31   9 - 382   541 - 541   543 - 546
2 147 2.72   383 - 540   542 - 542

Sequence


           ________________________________________________________________________________________________________________________ 
 2pjr(A) : ******QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 
         :                                                                                                                          
 1pjr    : MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2pjr(A) : QLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 
         :                                                                                                                          
 1pjr    : QLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKR---yYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2pjr(A) : ERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 
         :                                                                                                                          
 1pjr    : ERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 
           ________________________________________________________________________________________________________________________ 

           ___________________382__________________________________________________________________________________________________ 
 2pjr(A) : NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSV 
         :                                                                                                                          
 1pjr    : NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTID------------lFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSV 
           ___________________382__________________________________________________________________________________________________ 

           ________________________________________________________539_____________________________________________________________ 
 2pjr(A) : TELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD**************************************************** 
         :                                                                                                                          
 1pjr    : TELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISgDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEE 
           ________________________________________________________539_____________________________________________________________ 

           ______________________________________                                                                                   
 2pjr(A) : **************************************                                                                                   
         :                                                                                                                          
 1pjr    : ELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASR                                                                                   
           ______________________________________                                                                                   

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
152.9
Translation
(A)
7.2
Closure
(%)
36.8
Bending Residues
( green )
  382 - 385
  539 - 546
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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