Histidine Decarboxylase Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Histidine Decarboxylase Alpha Chain
  Conformer 1
(PDB)
1ibv (F)
  Conformer 2
(PDB)
1hq6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 172 0.63   85 - 155   179 - 196   211 - 243   259 - 308
2 52 0.65   156 - 178   197 - 210   244 - 258

Sequence


           ______________________________________________________________________155____________________178_______________196______ 
 1ibv(F) : FTGVQGRVIGYDILRSPEVDKAKPLFTETQWDGSELPIYDAKPLQDALVEYFGTEQDRRHYPAPGSFIVCANKGVTAERPKNDADMKPGQGYGVWSAIAISFAKDPTKDSSMFVEDAGVW 
         :                                                                                                                          
 1hq6(B) : FTGVQGRVIGYDILRSPEVDKAKPLFTETQWDGSELPIYDAKPLQDALVEYFGTEQDRRHYPAPGSFIVCANKGVTAERPKNDADMKPGQGYGVWSAIAISFAKDPTKDSSMFVEDAGVW 
           ______________________________________________________________________155____________________178_______________196______ 

           _____210______________________________243____________258____________________________________________________             
 1ibv(F) : ETPNEDELLEYLEGRRKAMAKSIAECGQDAHASFESSWIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKMGYKSLSANNALKY             
         :                                                                                                                          
 1hq6(B) : ETPNEDELLEYLEGRRKAMAKSIAECGQDAHASFESSWIGFAYTMMEPGQIGNAITVAPYVSLPIDSIPGGSILTPDKDMEIMENLTMPEWLEKMGYKSLSANNALKY             
           _____210______________________________243____________258____________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.6
Translation
(A)
-0.3
Closure
(%)
8.3
Bending Residues
( green )
  155 - 156
  178 - 179
  196 - 197
  210 - 211
  243 - 244
  258 - 259
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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