Hla Class II Histocompatibility Antigen, Dr-1 Beta Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla Class II Histocompatibility Antigen, Dr-1 Beta Chain
  Conformer 1
(PDB)
1jwm (B)
  Conformer 2
(PDB)
1bx2 (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 99 0.53   6 - 93   120 - 121   148 - 156
2 78 1.6   94 - 119   122 - 147   157 - 185

Sequence


           ___________________________________________________________________________________________93_______________________119_ 
 1jwm(B) : GDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQ---hHNLLVCSVS 
         :                                                                                                                          
 1bx2(B) : **TRPRFLWQPKRECHFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVS 
           ___________________________________________________________________________________________93_______________________119_ 

           ________________________147______156_____________________________________                                                
 1jwm(B) : GFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA***                                                
         :                                                                                                                          
 1bx2(B) : GFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSE                                                
           ________________________147______156_____________________________________                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.8
Translation
(A)
0.0
Closure
(%)
96.9
Bending Residues
( green )
  93 - 94
  119 - 122
  147 - 148
  156 - 157
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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