425Aa Long Hypothetical Proton Glutamate Symport Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 425Aa Long Hypothetical Proton Glutamate Symport Protein
  Conformer 1
(PDB) 		2nww (C)
  Conformer 2
(PDB) 		2nwl (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 371 0.58   15 - 344   366 - 411
2 21 1.65   345 - 365

Sequence


           ________________________________________________________________________________________________________________________ 
 2nww(C) : YPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPP 
         :                                                                                                                          
 2nwl(A) : YPVLIKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQF-----pP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2nww(C) : LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFV 
         :                                                                                                                          
 2nwl(A) : LVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFV 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________341_____________________365____ 
 2nww(C) : LLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHS 
         :                                                                                                                          
 2nwl(A) : LLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHS 
           _________________________________________________________________________________________341_____________________365____ 

           _______________________________________________                                                                          
 2nww(C) : VGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                          
         :                                                                                                                          
 2nwl(A) : VGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE                                                                          
           _______________________________________________                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.3
Translation
(A) 		-1.1
Closure
(%) 		87.6
Bending Residues
( green ) 		  341 - 345
  365 - 371
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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