Acetolactate Synthase, Catabolic

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetolactate Synthase, Catabolic
  Conformer 1
(PDB)
1ozh (B)
  Conformer 2
(PDB)
1ozf (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 383 0.77   9 - 189   259 - 261   263 - 267   349 - 552
2 150 0.49   191 - 258   262 - 262   268 - 348

Sequence


           ________________________________________________________________________________________________________________________ 
 1ozh(B) : VRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRAD-------sMDTVA 
         :                                                                                                                          
 1ozf(A) : VRQWAHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVA 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________189_________________________________________________________ 
 1ozh(B) : MFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASGAPQM-aAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAG 
         :                                                                                                                          
 1ozf(A) : MFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLP---ApQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAG 
           ____________________________________________________________189_________________________________________________________ 

           _________258______267______________________________________________________________________________348__________________ 
 1ozh(B) : AVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQL 
         :                                                                                                                          
 1ozf(A) : AVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQL 
           _________258______267______________________________________________________________________________348__________________ 

           ________________________________________________________________________________________________________________________ 
 1ozh(B) : NQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEK 
         :                                                                                                                          
 1ozf(A) : NQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGYNMVAIQEEK 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________                                                
 1ozh(B) : KYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDNPLLMGQLHLSQIL                                                
         :                                                                                                                          
 1ozf(A) : KYQRLSGVEFGPMDFKAYAESFGAKGFAVESAEALEPTLRAAMDVDGPAVVAIPVDYRDNPLLMGQLH*****                                                
           _________________________________________________________________________                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.9
Translation
(A)
-0.1
Closure
(%)
98.6
Bending Residues
( green )
  189 - 192
  258 - 259
  261 - 263
  267 - 268
  348 - 349
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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